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Tolerate optional genome load failures and explain the fatal ones - #2111

Merged

jrobinso merged 23 commits into

masterfrom

remove-genome-load-failures

Oct 12, 2026

Merged

Tolerate optional genome load failures and explain the fatal ones#2111
jrobinso merged 23 commits into
masterfrom
remove-genome-load-failures

Commits on Oct 10, 2026
- Remove genome.loadFailures
  
  jrobinso
  and
  claude
  committed
  cc64708
- Fall back from a failed alias bigBed on search
  
  jrobinso
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  5e3fb0e
- Make bpt and chrom.sizes optional; require a locus
  
  jrobinso
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  7dd874e
- Update load-failure rules in CLAUDE.md
  
  jrobinso
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  2bd3b40
- Default to the first 2bit sequence without names
  
  jrobinso
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  df4f5dd
- Document the first-chromosome default
  
  jrobinso
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  99edb18
- Queue alerts so none replaces another
  
  jrobinso
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  claude
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  a9b2b0c
- Let BPTree load errors through
  
  jrobinso
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  79706cb
- Alert when optional genome parts fail
  
  jrobinso
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  de382d3
- Document load warnings and alert queue
  
  jrobinso
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  8ab720c
Commits on Oct 11, 2026
- Report load failures from the browser, not readers
  
  jrobinso
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  claude
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  6f5a2d5
Commits on Oct 12, 2026
- Merge branch 'master' into remove-genome-load-failures
  jrobinso
  committed
  477bbc3
- Say what failed when a genome cannot load
  
  jrobinso
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  claude
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  c5c6acd
- Say what failed when a session file cannot load
  
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  970847a
- Say once what happened to a file that failed to load
  
  jrobinso
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  5c99fa8
- Say what failed when a track cannot load
  
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  5235654
- Size the alert dialog to its message
  
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  25e478f
- Say once what happened to a track or session file
  
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  0962e18
- Name a failed track only by a configured name
  
  jrobinso
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  7017702
- Fix review findings on load failures
  
  jrobinso
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  e1dda31
- Call a genome's hub an assembly hub
  
  jrobinso
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  1a95398
- Fix hub session test expectation
  
  jrobinso
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  claude
  committed
  c95ba75
- Don't test the wording of load-failure messages
  
  jrobinso
  and
  claude
  committed
  891387b

Commits

Commits on Oct 10, 2026

Commits on Oct 11, 2026

Commits on Oct 12, 2026