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@vari-bbc

VAI BBC

Van Andel Institute Bioinformatics and Biostatistics Core
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  1. rnaseq_workflow rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    Python 14 17

  2. Biscuit_Snakemake_Workflow Biscuit_Snakemake_Workflow Public archive

    Snakemake Workflow For WGBS Data

    Python 3 13

  3. scRNAseq scRNAseq Public

    Python 2

  4. bioinfo_workshop_2025 bioinfo_workshop_2025 Public

    Jupyter Notebook 2

  5. piwi_RNA_pipeline piwi_RNA_pipeline Public

    Scripts for heirarchical assignment of reads to feature biotypes

    Perl 1

  6. Mouse_Brain_Heatmap Mouse_Brain_Heatmap Public

    rmd with the framework to create Mouse brain heatmaps and analyze data

    1

Repositories

Showing 10 of 57 repositories
  • damR Public
    vari-bbc/damR's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 29, 2026
  • PixFluRoBlend Public

    Fits monotone-increasing smooth curves (via scam) to signals quantified by two methods (pixel intensity and RFU), then combines them into a single estimate with a weighted geometric mean. Weights depend on where the two curves cross and on each method's estimated precision.

    vari-bbc/PixFluRoBlend's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 28, 2026
  • single_cell_workshop_2026 Public

    Single cell workshop instructional materials

    vari-bbc/single_cell_workshop_2026's past year of commit activity
    HTML 0 0 0 0 Updated Oct 26, 2026
  • Mouse-to-Usable_M2U Public
    vari-bbc/Mouse-to-Usable_M2U's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 22, 2026
  • rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    vari-bbc/rnaseq_workflow's past year of commit activity
    Python 14 GPL-3.0 17 3 0 Updated Oct 13, 2026
  • EZRShiny Public
    vari-bbc/EZRShiny's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 30, 2026
  • prep_bbc_shared Public

    Pipeline for preparing shared resources such as aligner index files in the BBC.

    vari-bbc/prep_bbc_shared's past year of commit activity
    Python 0 GPL-3.0 0 1 0 Updated Sep 29, 2026
  • variants-gatk4 Public
    vari-bbc/variants-gatk4's past year of commit activity
    Python 1 GPL-3.0 0 1 0 Updated Sep 9, 2026
  • amplicon_var_reports Public

    Creates an IGV report of each amplicon using the called VCF as site table.

    vari-bbc/amplicon_var_reports's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 27, 2026
  • RNA-Seq-Workflow-App Public
    vari-bbc/RNA-Seq-Workflow-App's past year of commit activity
    R 1 GPL-3.0 0 3 0 Updated Jul 23, 2026
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